Matthieu Bruneaux

Code

Publicly available code I wrote is available on GitLab or GitHub, depending on the project.

Projects in R

Stable packages

  • isotracer is a package for the analysis of tracer addition experiments. It is available on CRAN.

Works in progress

  • ambience is a package for Bayesian analysis of allometric data. It has a companion package, allomdata, which ships published allometric datasets.
  • etalon is a package to evaluate statistical models.
  • ribbon is a package to easily draw pretty ribbons in R plots.
  • pelicula is a package to render individual frames with R and combine them into an animation. It depends on ffmpeg to create a movie from still frames.

Projects in Python

The projects below are old programs I wrote to provide a command line interface to some biological databases.

  • pygenbank is an interface to NCBI’s GenBank.
  • pyensembl is an interface to the Ensembl Bacteria API.